Domain ID e3ubxD2

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  • A: a+b two layers
  • X: MHC antigen-recognition domain
  • H: MHC antigen-recognition domain
  • T: MHC antigen-recognition domain
  • F: MHC_I_3
UID: 000433310
Type: Automatic domain
Parent: e1lqvA1
Range: D:6-185
Ligands: 09N NAG
PDB: 3ubx
PDB Description: Antigen-presenting glycoprotein CD1d1
UniProt: P11609
Hsap BLAST neighbor: P15813
Species: Mus musculus

Structure of domain e3ubxD2

Domains in the same chain:

e3ubxD2 D:6-185 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3ubxD1 D:186-286 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3ubxA2 A:6-185 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3ubxA1 A:186-286 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxB1 B:1-99 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxD2 D:6-185 MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain
e3ubxD1 D:186-286 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxE1 E:2-99 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxG1 G:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxG2 G:121-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxH2 H:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxH1 H:121-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxI1 I:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxI2 I:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ubxL2 L:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3ubxD2 of H-group "MHC antigen-recognition domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ubxE1 D:X,Y,Z->E:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ubxG1 D:X,Y,Z->G:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ubxH2 D:x,y,z->H:X,Y,Z-1 Immunoglobulin-related Interaction Interface Pymol
e3ubxD1 D:x,y,z->D:-Y-1,X-Y-1,Z Immunoglobulin-related Interaction Interface Pymol