ECOD: domain e3v4mA1

Domain ID e3v4mA1

A: a+b two layers
X: Alpha-beta plaits
H: RNA-binding domain, RBD
T: RNA-binding domain, RBD
F: RRM_1

UID:	000150626
Type:	Automatic domain
Parent:	e1o0pA1
Range:	A:0-475
Ligands:	CL
PDB:	3v4m
PDB Description:	Splicing factor U2AF 65 kDa subunit
UniProt:	P26369
Hsap BLAST neighbor:	P26368
Species:	Mus musculus

Domains in the same chain:

Download Pymol

e3v4mA1	A:0-475	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e3v4mA1	A:0-475	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e3v4mB2	B:372-475	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Structural contacts of domain e3v4mA1 of H-group "RNA-binding domain, RBD":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3v4mB2	A:X,Y,Z->B:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mB2	A:-Y+1,-X+1,-Z+1/6->B:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mB2	A:x,y,z->B:X-Y,-Y+1,-Z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mB2	A:X-Y,-Y+1,-Z->B:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mA1	A:x,y,z->A:-Y+1,-X+1,-Z+1/6	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mA1	A:-Y+1,-X+1,-Z+1/6->A:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mB2	A:X-Y,X,Z-1/6->B:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mA1	A:x,y,z->A:-Y,-X,-Z+1/6	RNA-binding domain, RBD	Interaction Interface Pymol
e3v4mA1	A:-Y,-X,-Z+1/6->A:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol