ECOD: domain e3v7jA8

Domain ID e3v7jA8

A: a+b three layers
X: Nucleotidyltransferase-like
H: Nucleotidyltransferase
T: Nucleotidyltransferase
F: DNA_pol_B_thumb,DNA_pol_B_palm

UID:	001170568
Type:	Automatic domain
Parent:	e2fmpA3
Range:	A:149-335
Ligands:	CL NA
PDB:	3v7j
PDB Description:	DNA polymerase beta
UniProt:	P06766
Hsap BLAST neighbor:	P06746
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e3v7jA8

Domains in the same chain:

Download Pymol

e3v7jA7	A:9-91	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3v7jA9	A:92-148	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3v7jA8	A:149-335	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Domains in the same PDB:

e3v7jA7	A:9-91	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3v7jA9	A:92-148	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3v7jA8	A:149-335	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Structural contacts of domain e3v7jA8 of H-group "Nucleotidyltransferase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3v7jA7	A:x,y,z->A:-X+1/2,-Y,Z-1/2	SAM/DNA-glycosylase	Interaction Interface Pymol
e3v7jA8	A:x,y,z->A:X-1/2,-Y-1/2,-Z	Nucleotidyltransferase	Interaction Interface Pymol
e3v7jA8	A:X-1/2,-Y-1/2,-Z->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol