ECOD: domain e3v89B1

Domain ID e3v89B1

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: Transferrin

UID:	001522958
Type:	Automatic domain
Parent:	e1ryoA2
Range:	B:337-424,B:584-675
PDB:	3v89
PDB Description:	SEROTRANSFERRIN
UniProt:	P02787
Hsap BLAST neighbor:	P02787
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3v89B1

Domains in the same chain:

Download Pymol

e3v89B1	B:337-424,B:584-675	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3v89B2	B:425-583	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3v89A1	A:51-179	N0 domain in phage tail proteins and secretins-like	TonB-dependent receptor plug domain	TonB-dependent receptor plug domain
e3v89A2	A:180-915	Outer membrane meander beta-barrels	Porins	Ligand-gated protein channel
e3v89B1	B:337-424,B:584-675	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3v89B2	B:425-583	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3v89B1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3v89A1	B:x,y,z->A:X,Y,Z	TonB-dependent receptor plug domain	Interaction Interface Pymol
e3v89A2	B:x,y,z->A:X,Y,Z	Porins	Interaction Interface Pymol
e3v89A2	B:X-1,Y,Z->A:x,y,z	Porins	Interaction Interface Pymol