ECOD: domain e3vbbB5

Domain ID e3vbbB5

A: a+b three layers
X: Class II aaRS and biotin synthetases
H: Class II aaRS and biotin synthetases
T: Class II aaRS and biotin synthetases
F: tRNA-synt_2b

UID:	001269732
Type:	Automatic domain
Parent:	e1qf6A3
Range:	B:141-475
Ligands:	MG PO4
PDB:	3vbb
PDB Description:	SERYL-TRNA SYNTHETASE, CYTOPLASMIC
UniProt:	P49591
Hsap BLAST neighbor:	P49591
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3vbbB6	B:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbB5	B:141-475	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Domains in the same PDB:

e3vbbA4	A:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbA2	A:141-476	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3vbbB6	B:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbB5	B:141-475	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3vbbC4	C:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbC2	C:141-475	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3vbbD4	D:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbD2	D:141-476	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3vbbE2	E:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbE1	E:141-476	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e3vbbF2	F:2-144	Long alpha-hairpin	tRNA-binding arm	tRNA-binding arm
e3vbbF1	F:141-476	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases

Structural contacts of domain e3vbbB5 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vbbA2	B:x,y,z->A:X,Y,Z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e3vbbA4	B:x,y,z->A:-X-1,Y-1/2,-Z+1/2	tRNA-binding arm	Interaction Interface Pymol
e3vbbF2	B:x,y,z->F:-X-1,Y-1/2,-Z+1/2	tRNA-binding arm	Interaction Interface Pymol
e3vbbC2	B:x,y,z->C:X-1/2,-Y+1/2,-Z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e3vbbE2	B:X,Y,Z->E:x,y,z	tRNA-binding arm	Interaction Interface Pymol