Domain ID e3vd3A4

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: Glyco_hydro_2
UID: 000149312
Type: Automatic domain
Parent: e1jz8A2
Range: A:220-333
Ligands: DMS
PDB: 3vd3
PDB Description: Beta-galactosidase
UniProt: P00722
Species: Escherichia coli

Structure of domain e3vd3A4

Domains in the same chain:

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e3vd3A3 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd3A4 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3A1 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd3A5 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3A2 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vd3A3 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd3A4 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3A1 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd3A5 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3A2 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd3B13 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd3B15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3B11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd3B14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3B12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd3C13 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd3C15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3C11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd3C14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3C12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd3D8 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd3D10 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3D6 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd3D9 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd3D7 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vd3A4 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vd3D6 A:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3vd3D8 A:X,Y,Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vd3D8 A:-X+1,Y-1/2,-Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vd3D10 A:-X+1,Y-1/2,-Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vd3B12 A:-X+1,Y-1/2,-Z+1->B:x,y,z supersandwich Interaction Interface Pymol
e3vd3C15 A:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol