Domain ID e3vd5A11

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 001163508
Type: Automatic domain
Parent: e1jz8A5
Range: A:334-625
Ligands: DMS MG NA
PDB: 3vd5
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e3vd5A11

Domains in the same chain:

Download Pymol

e3vd5A13 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd5A15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5A11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd5A14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5A12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vd5A13 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd5A15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5A11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd5A14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5A12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd5B13 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd5B15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5B11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd5B14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5B12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd5C13 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd5C15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5C11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd5C14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5C12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd5D13 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd5D15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5D11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd5D14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd5D12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vd5A11 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vd5D13 A:X,Y,Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vd5D11 A:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3vd5D15 A:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vd5B11 A:X,Y,Z->B:x,y,z TIM barrels Interaction Interface Pymol