Domain ID e3vd7C11

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 001163453
Type: Automatic domain
Parent: e1jz8A5
Range: C:334-625
Ligands: DMS GTZ MG NA
PDB: 3vd7
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e3vd7C11

Domains in the same chain:

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e3vd7C13 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd7C15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7C11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd7C14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7C12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vd7A13 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd7A15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7A11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd7A14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7A12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd7B13 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd7B15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7B11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd7B14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7B12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd7C13 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd7C15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7C11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd7C14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7C12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd7D13 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd7D15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7D11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd7D14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd7D12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vd7C11 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vd7B13 C:x,y,z->B:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e3vd7B15 C:x,y,z->B:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3vd7B11 C:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e3vd7D11 C:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3vd7B12 C:-X+2,Y-1/2,-Z+1->B:x,y,z supersandwich Interaction Interface Pymol