Domain ID e3vd9B11

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 001163233
Type: Automatic domain
Parent: e1jz8A5
Range: B:334-625
Ligands: DMS IPT MG NA
PDB: 3vd9
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e3vd9B11

Domains in the same chain:

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e3vd9B13 B:8-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd9B15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9B11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd9B14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9B12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vd9A13 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd9A15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9A11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd9A14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9A12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd9B13 B:8-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd9B15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9B11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd9B14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9B12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd9C13 C:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd9C15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9C11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd9C14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9C12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vd9D13 D:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vd9D15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9D11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vd9D14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vd9D12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vd9B11 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vd9C11 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e3vd9C13 B:X,Y,Z->C:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vd9C15 B:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vd9A11 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3vd9C11 B:x,y,z->C:X-1/2,-Y+1/2,-Z TIM barrels Interaction Interface Pymol
e3vd9C12 B:x,y,z->C:X-1/2,-Y+1/2,-Z supersandwich Interaction Interface Pymol