Domain ID e3vdaB11

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 001163538
Type: Automatic domain
Parent: e1jz8A5
Range: B:334-625
Ligands: DMS MG NA
PDB: 3vda
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e3vdaB11

Domains in the same chain:

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e3vdaB13 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdaB15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaB11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdaB14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaB12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vdaA13 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdaA15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaA11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdaA14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaA12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdaB13 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdaB15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaB11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdaB14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaB12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdaC13 C:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdaC15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaC11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdaC14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaC12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdaD13 D:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdaD15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaD11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdaD14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdaD12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vdaB11 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vdaC15 B:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vdaC11 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e3vdaC13 B:X,Y,Z->C:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vdaA11 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3vdaC12 B:x,y,z->C:X-1/2,-Y+1/2,-Z supersandwich Interaction Interface Pymol
e3vdaC11 B:x,y,z->C:X-1/2,-Y+1/2,-Z TIM barrels Interaction Interface Pymol