Domain ID e3vdbB15

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: Glyco_hydro_2
UID: 001163067
Type: Automatic domain
Parent: e1jz8A2
Range: B:220-333
Ligands: DMS
PDB: 3vdb
PDB Description: Beta-galactosidase
UniProt: P00722
Species: Escherichia coli

Structure of domain e3vdbB15

Domains in the same chain:

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e3vdbB13 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdbB15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbB11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdbB14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbB12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vdbA13 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdbA15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbA11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdbA14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbA12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdbB13 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdbB15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbB11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdbB14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbB12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdbC13 C:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdbC15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbC11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdbC14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbC12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdbD13 D:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdbD15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbD11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdbD14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdbD12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vdbB15 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vdbC13 B:X,Y,Z->C:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vdbC11 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e3vdbC13 B:x,y,z->C:X-1/2,-Y+1/2,-Z Galactose-binding domain-like Interaction Interface Pymol
e3vdbA12 B:-X-1/2,-Y,Z-1/2->A:x,y,z supersandwich Interaction Interface Pymol
e3vdbD15 B:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol