Domain ID e3vdcA13

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Galactose-binding domain-like
  • T: Galactose-binding domain-like
  • F: Glyco_hydro_2_N
UID: 001163415
Type: Automatic domain
Parent: e1jz8A1
Range: A:9-219
Ligands: DMS IPT MG NA
PDB: 3vdc
PDB Description: Beta-galactosidase
UniProt: P00722
Species: Escherichia coli

Structure of domain e3vdcA13

Domains in the same chain:

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e3vdcA13 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdcA15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcA11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdcA14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcA12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3vdcA13 A:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdcA15 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcA11 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdcA14 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcA12 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdcB13 B:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdcB15 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcB11 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdcB14 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcB12 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdcC13 C:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdcC15 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcC11 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdcC14 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcC12 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3vdcD13 D:9-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3vdcD15 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcD11 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3vdcD14 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vdcD12 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3vdcA13 of H-group "Galactose-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vdcD13 A:X,Y,Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e3vdcD11 A:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3vdcD15 A:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vdcD15 A:X-1/2,-Y-1/2,-Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3vdcB12 A:x,y,z->B:-X,Y-1/2,-Z-1/2 supersandwich Interaction Interface Pymol
e3vdcA14 A:x,y,z->A:-X,Y-1/2,-Z-1/2 Immunoglobulin-related Interaction Interface Pymol