Domain ID e3ve1D3

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Transferrin
UID: 001522983
Type: Automatic domain
Parent: e1ryoA2
Range: D:3-99,D:584-679
Ligands: CO3 FE GOL
PDB: 3ve1
PDB Description: SEROTRANSFERRIN
UniProt: P02787
Hsap BLAST neighbor: P02787
Species: Homo sapiens

Structure of domain e3ve1D3

Domains in the same chain:

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e3ve1D3 D:3-99,D:584-679 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1D1 D:94-332 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1D2 D:333-583 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e3ve1A3 A:38-90,A:110-163 Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B
e3ve1A4 A:164-340 Outer membrane meander beta-barrels OMPA-like OMPA-like
e3ve1A1 A:488-499,A:520-689 Outer membrane meander beta-barrels OMPA-like OMPA-like
e3ve1B3 B:3-99,B:584-679 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1B1 B:94-332 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1B2 B:333-583 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1C4 C:38-90,C:113-171 Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B
e3ve1C2 C:172-350 Outer membrane meander beta-barrels OMPA-like OMPA-like
e3ve1C3 C:374-447,C:476-499,C:520-531 Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B Handle domain in transferrin-binding protein B
e3ve1C1 C:532-691 Outer membrane meander beta-barrels OMPA-like OMPA-like
e3ve1D3 D:3-99,D:584-679 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1D1 D:94-332 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3ve1D2 D:333-583 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e3ve1D3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ve1C2 D:x,y,z->C:X,Y,Z OMPA-like Interaction Interface Pymol
e3ve1B1 D:X-1/2,-Y-1/2,-Z->B:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3ve1A4 D:x,y,z->A:X,Y,Z OMPA-like Interaction Interface Pymol
e3ve1A3 D:x,y,z->A:X,Y,Z Handle domain in transferrin-binding protein B Interaction Interface Pymol
e3ve1C2 D:-X+1,Y-1/2,-Z-1/2->C:x,y,z OMPA-like Interaction Interface Pymol