Domain ID e3vgvP1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Nucleoside diphosphate kinases
  • T: Nucleoside diphosphate kinases
  • F: NDK
UID: 000966480
Type: Automatic domain
Parent: e3bbbA1
Range: P:1-140
PDB: 3vgv
PDB Description: NUCLEOSIDE DIPHOSPHATE KINASE
UniProt: Q83WH5
Hsap BLAST neighbor: Q13232
Species: Halomonas sp. #593

Structure of domain e3vgvP1

Domains in the same chain:

e3vgvP1 P:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases

Domains in the same PDB:

e3vgvA1 A:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvB1 B:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvC1 C:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvD1 D:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvE1 E:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvF1 F:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvG1 G:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvH1 H:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvI1 I:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvJ1 J:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvK1 K:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvL1 L:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvM1 M:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvN2 N:2-141 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvO1 O:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases
e3vgvP1 P:1-140 Alpha-beta plaits Nucleoside diphosphate kinases Nucleoside diphosphate kinases

Structural contacts of domain e3vgvP1 of H-group "Nucleoside diphosphate kinases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vgvO1 P:x,y,z->O:X,Y,Z Nucleoside diphosphate kinases Interaction Interface Pymol
e3vgvC1 P:-X,Y-1/2,-Z-1->C:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3vgvH1 P:X,Y-1,Z+1->H:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3vgvN2 P:x,y,z->N:X,Y,Z Nucleoside diphosphate kinases Interaction Interface Pymol
e3vgvO1 P:-X,Y-1/2,-Z-1->O:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3vgvM1 P:x,y,z->M:X,Y,Z Nucleoside diphosphate kinases Interaction Interface Pymol