ECOD: domain e3vmfA1

Domain ID e3vmfA1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: GTP_EFTU

UID:	001213422
Type:	Automatic domain
Parent:	e2c78A3
Range:	A:4-201
Ligands:	GTP MG
PDB:	3vmf
PDB Description:	ELONGATION FACTOR 1-ALPHA
UniProt:	Q9YAV0
Hsap BLAST neighbor:	P68104
Species:

Domain
In chain context
In PDB context

Structure of domain e3vmfA1

Domains in the same chain:

Download Pymol

e3vmfA1	A:4-201	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vmfA7	A:202-293	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vmfA8	A:294-430	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e3vmfA1	A:4-201	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3vmfA7	A:202-293	cradle loop barrel	RIFT-related	Alanine racemase-C
e3vmfA8	A:294-430	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e3vmfB5	B:9-138	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
e3vmfB4	B:139-280	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3vmfB3	B:281-371	Bacillus chorismate mutase-like	L30e-like	L30e-like

Structural contacts of domain e3vmfA1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vmfB4	A:X,Y,Z->B:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3vmfB3	A:-X-1/2,Y-1/2,-Z-1->B:x,y,z	L30e-like	Interaction Interface Pymol
e3vmfA1	A:x,y,z->A:-X,Y,-Z-1	P-loop domains-related	Interaction Interface Pymol
e3vmfA1	A:-X,Y,-Z-1->A:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3vmfB5	A:x,y,z->B:-X-1/2,Y-1/2,-Z	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	Interaction Interface Pymol
e3vmfA7	A:x,y,z->A:X,Y-1,Z	RIFT-related	Interaction Interface Pymol
e3vmfB5	A:X-1/2,Y-1/2,Z->B:x,y,z	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	Interaction Interface Pymol
e3vmfB5	A:X-1/2,Y+1/2,Z->B:x,y,z	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	Interaction Interface Pymol