Domain ID e3vnvA8

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: GTP_EFTU_D2
UID: 001384545
Type: Automatic domain
Parent: e2c78A1
Range: A:482-576
PDB: 3vnv
PDB Description: Elongation factor Ts, Elongation factor Tu, LINKER, Q beta replicase
UniProt: P0A6N3
Hsap BLAST neighbor: P49411
Species: Enterobacteria phage Qbeta

Structure of domain e3vnvA8

Domains in the same chain:

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e3vnvA40 A:2-55 RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1
e3vnvA38 A:56-140 T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain
e3vnvA6 A:141-263 T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain
e3vnvA5 A:264-326,A:348-481 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vnvA8 A:482-576 cradle loop barrel RIFT-related Alanine racemase-C
e3vnvA7 A:574-678 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3vnvA3 A:675-680,A:700-1079 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vnvA4 A:1075-1264 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e3vnvA40 A:2-55 RuvA-C RuvA-C, UBA, CRAL/TRIO-N, HBS1 RuvA-C, UBA, CRAL/TRIO-N, HBS1
e3vnvA38 A:56-140 T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain
e3vnvA6 A:141-263 T-fold Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain
e3vnvA5 A:264-326,A:348-481 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3vnvA8 A:482-576 cradle loop barrel RIFT-related Alanine racemase-C
e3vnvA7 A:574-678 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e3vnvA3 A:675-680,A:700-1079 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3vnvA4 A:1075-1264 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e3vnvA8 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vnvA5 A:x,y,z->A:X,-Y,-Z P-loop domains-related Interaction Interface Pymol
e3vnvA5 A:X,-Y,-Z->A:x,y,z P-loop domains-related Interaction Interface Pymol
e3vnvA3 A:x,y,z->A:-X+1,Y,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3vnvA8 A:x,y,z->A:-X+1,Y,-Z-1/2 RIFT-related Interaction Interface Pymol
e3vnvA8 A:-X+1,Y,-Z-1/2->A:x,y,z RIFT-related Interaction Interface Pymol
e3vnvA3 A:-X+1,Y,-Z-1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol