ECOD: domain e3vrlD1

Domain ID e3vrlD1

A: alpha bundles
X: Retrovirus capsid protein
H: Retrovirus capsid protein-C
T: Retrovirus capsid protein-C
F: Gag_p24_C

UID:	001117038
Type:	Automatic domain
Parent:	e1a8oA1
Range:	D:149-221
PDB:	3vrl
PDB Description:	GAG PROTEIN
UniProt:	Q9DGV7
Species:	Human immunodeficiency virus 1

Domain
In chain context
In PDB context

Structure of domain e3vrlD1

Domains in the same chain:

Download Pymol

e3vrlD1	D:149-221	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Domains in the same PDB:

e3vrlC1	C:149-221	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3vrlD1	D:149-221	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C
e3vrlE1	E:1-122	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlE2	E:123-222	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlF1	F:1-108	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlF2	F:109-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlH2	H:1-122	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlH1	H:123-222	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3vrlL2	L:108-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3vrlD1 of H-group "Retrovirus capsid protein-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3vrlE1	D:x,y,z->E:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e3vrlC1	D:x,y,z->C:X,Y,Z	Retrovirus capsid protein-C	Interaction Interface Pymol
e3vrlL2	D:-X+1/2,-Y,Z-1/2->L:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e3vrlF1	D:x,y,z->F:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e3vrlD1	D:x,y,z->D:X-1/2,-Y+1/2,-Z	Retrovirus capsid protein-C	Interaction Interface Pymol
e3vrlD1	D:X-1/2,-Y+1/2,-Z->D:x,y,z	Retrovirus capsid protein-C	Interaction Interface Pymol