Domain ID e3vzdB6

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: Phosphofructokinase N-terminal domain
  • F: DAGK_cat
UID: 001210967
Type: Automatic domain
Parent: e2bonA2
Range: B:9-145
Ligands: CL MG POP
PDB: 3vzd
PDB Description: Sphingosine kinase 1
UniProt: Q9NYA1
Hsap BLAST neighbor: Q9NYA1
Species: Homo sapiens

Structure of domain e3vzdB6

Domains in the same chain:

Download Pymol

e3vzdB6 B:9-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdB5 B:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like

Domains in the same PDB:

e3vzdA2 A:6-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdA1 A:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like
e3vzdB6 B:9-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdB5 B:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like
e3vzdC6 C:6-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdC5 C:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like
e3vzdD6 D:6-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdD5 D:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like
e3vzdE6 E:9-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdE5 E:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like
e3vzdF6 F:6-145 Flavodoxin-like Class I glutamine amidotransferase-like Phosphofructokinase N-terminal domain
e3vzdF5 F:146-364 NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like NAD kinase beta sandwich domain-like

Structural contacts of domain e3vzdB6 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3vzdC6 B:X,Y,Z->C:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e3vzdA1 B:x,y,z->A:X,Y,Z NAD kinase beta sandwich domain-like Interaction Interface Pymol