Domain ID e3wqyA1

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  • A: a+b three layers
  • X: Class II aaRS and biotin synthetases
  • H: Class II aaRS and biotin synthetases
  • T: Class II aaRS and biotin synthetases
  • F: tRNA-synt_2c
UID: 001298751
Type: Manual and representative domain
Range: A:2-256
Ligands: A5A
PDB: 3wqy
PDB Description: Alanine--tRNA ligase
UniProt: O28029
Hsap BLAST neighbor: Q5JTZ9
Species:

Structure of domain e3wqyA1

Domains in the same chain:

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e3wqyA1 A:2-256 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e3wqyA2 A:257-487 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
e3wqyA3 A:488-588 cradle loop barrel RIFT-related Alanine racemase-C
e3wqyA4 A:589-737 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain
e3wqyA6 A:738-784 C-terminal helical domain of alanine-tRNA ligase C-terminal helical domain of alanine-tRNA ligase Archaeal C-Ala helical domain
e3wqyA5 A:785-906 C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases

Domains in the same PDB:

e3wqyA1 A:2-256 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e3wqyA2 A:257-487 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
e3wqyA3 A:488-588 cradle loop barrel RIFT-related Alanine racemase-C
e3wqyA4 A:589-737 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain
e3wqyA6 A:738-784 C-terminal helical domain of alanine-tRNA ligase C-terminal helical domain of alanine-tRNA ligase Archaeal C-Ala helical domain
e3wqyA5 A:785-906 C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases
e3wqyB6 B:1-256 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e3wqyB4 B:257-487 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
e3wqyB1 B:488-588 cradle loop barrel RIFT-related Alanine racemase-C
e3wqyB3 B:589-737 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain ThrRS/AlaRS editing domain
e3wqyB2 B:738-784 C-terminal helical domain of alanine-tRNA ligase C-terminal helical domain of alanine-tRNA ligase Archaeal C-Ala helical domain
e3wqyB5 B:785-905 C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases C-terminal domain in DHH phosphoesterases

Structural contacts of domain e3wqyA1 of H-group "Class II aaRS and biotin synthetases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3wqyB1 A:x,y,z->B:X-1,Y,Z RIFT-related Interaction Interface Pymol
e3wqyB4 A:-X-1,Y-1/2,-Z+1/2->B:x,y,z Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Interaction Interface Pymol
e3wqyB6 A:-X,Y-1/2,-Z+1/2->B:x,y,z Class II aaRS and biotin synthetases Interaction Interface Pymol