Domain ID e3ze6B4

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 001030307
Type: Automatic domain
Parent: e1cc1L4
Range: B:54-96,B:406-454
Ligands: CL FCO FE2 FSX NI SF4
PDB: 3ze6
PDB Description: PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYS SELENOCYSTEINE-CONTAINING
UniProt: Q72AS3
Species:

Structure of domain e3ze6B4

Domains in the same chain:

e3ze6B3 B:15-53,B:455-495 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ze6B4 B:54-96,B:406-454 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ze6B2 B:97-275,B:325-405 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ze6B1 B:276-324 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e3ze6A4 A:7-204 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ze6A3 A:205-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3ze6B3 B:15-53,B:455-495 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ze6B4 B:54-96,B:406-454 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ze6B2 B:97-275,B:325-405 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ze6B1 B:276-324 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e3ze6B4 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ze6A4 B:x,y,z->A:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e3ze6A3 B:x,y,z->A:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e3ze6B3 B:x,y,z->B:X-1/2,-Y-1/2,-Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ze6B4 B:x,y,z->B:X-1/2,-Y-1/2,-Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ze6B1 B:x,y,z->B:X-1/2,-Y-1/2,-Z all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ze6B4 B:X-1/2,-Y-1/2,-Z->B:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3ze6B2 B:X-1/2,-Y-1/2,-Z->B:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol