Domain ID e3zeaB3

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 001030330
Type: Automatic domain
Parent: e1ublL5
Range: B:15-53,B:455-495
Ligands: FCO FE2 NI
PDB: 3zea
PDB Description: PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING
UniProt: Q72AS3
Species: Desulfovibrio vulgaris

Structure of domain e3zeaB3

Domains in the same chain:

e3zeaB3 B:15-53,B:455-495 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3zeaB4 B:54-96,B:406-454 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3zeaB2 B:97-275,B:325-405 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3zeaB1 B:276-324 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e3zeaA4 A:5-204 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3zeaA3 A:205-283 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3zeaB3 B:15-53,B:455-495 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3zeaB4 B:54-96,B:406-454 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3zeaB2 B:97-275,B:325-405 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3zeaB1 B:276-324 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e3zeaB3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3zeaA4 B:x,y,z->A:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e3zeaB3 B:x,y,z->B:-X,-X+Y,-Z+1/3 Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3zeaB3 B:-X,-X+Y,-Z+1/3->B:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3zeaA4 B:x,y,z->A:-X,-X+Y,-Z+1/3 Class I glutamine amidotransferase-like Interaction Interface Pymol