Domain ID e3zedB2

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: 'palm' domain in birnaviruse RNA-dependent RNA polymerase
  • F: Birna_RdRp_palm
UID: 001652678
Type: Automatic domain
Parent: e2pggA3
Range: B:27-522
Ligands: K
PDB: 3zed
PDB Description: RNA-DIRECTED RNA POLYMERASE
UniProt: P22173
Species: Infectious pancreatic necrosis virus

Structure of domain e3zedB2

Domains in the same chain:

Download Pymol

e3zedB2 B:27-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e3zedB3 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zedB1 B:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e3zedA1 A:27-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e3zedA2 A:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zedA3 A:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e3zedB2 B:27-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e3zedB3 B:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zedB1 B:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase
e3zedC2 C:27-522 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like 'palm' domain in birnaviruse RNA-dependent RNA polymerase
e3zedC1 C:523-695 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3zedC3 C:696-792 Sigma2 domain-like C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e3zedB2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3zedA1 B:X-1/2,-Y-1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedC3 B:X-1,Y,Z->C:x,y,z C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e3zedB2 B:x,y,z->B:-X,-Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedB2 B:-X,-Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedA1 B:x,y,z->A:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedA3 B:x,y,z->A:X,Y,Z C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e3zedC1 B:X,Y,Z->C:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3zedB1 B:x,y,z->B:X,Y,Z-1 C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase Interaction Interface Pymol
e3zedB2 B:x,y,z->B:X,Y,Z-1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedB2 B:X,Y,Z-1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedC2 B:-X-1,-Y,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3zedC1 B:x,y,z->C:X,Y,Z-1 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol