Domain ID e3zsfD1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_3
UID: 001523378
Type: Automatic domain
Parent: e4p0iB1
Range: D:39-135,D:233-275
PDB: 3zsf
PDB Description: ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID
UniProt: Q5F9M1
Species: Neisseria gonorrhoeae

Structure of domain e3zsfD1

Domains in the same chain:

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e3zsfD1 D:39-135,D:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfD2 D:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e3zsfA2 A:39-135,A:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfA1 A:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfB1 B:38-135,B:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfB2 B:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfC2 C:39-135,C:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfC1 C:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfD1 D:39-135,D:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfD2 D:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfE2 E:39-135,E:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfE1 E:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfF2 F:38-135,F:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfF1 F:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfG2 G:39-135,G:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfG1 G:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfH2 H:38-135,H:233-275 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3zsfH1 H:136-232 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e3zsfD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3zsfC1 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfC2 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfG2 D:x,y,z->G:-X+1,Y-1/2,-Z+2 Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfG1 D:x,y,z->G:-X+1,Y-1/2,-Z+2 Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfG2 D:x,y,z->G:-X,Y-1/2,-Z+2 Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfH2 D:X,Y,Z->H:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3zsfH1 D:x,y,z->H:-X,Y-1/2,-Z+2 Periplasmic binding protein-like II Interaction Interface Pymol