ECOD: domain e4a8yA4

Domain ID e4a8yA4

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: RdRP_1

UID:	001256481
Type:	Automatic domain
Parent:	e1ra6A2
Range:	A:1-491
Ligands:	ATP MG
PDB:	4a8y
PDB Description:	RNA-DIRECTED RNA POLYMERASE
UniProt:	P11124
Species:	Pseudomonas phage phi6

Domain
In chain context
In PDB context

Structure of domain e4a8yA4

Domains in the same chain:

Download Pymol

e4a8yA4	A:1-491	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4a8yA3	A:492-664	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e4a8yA4	A:1-491	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4a8yA3	A:492-664	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4a8yB4	B:1-491	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4a8yB3	B:492-664	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e4a8yC4	C:1-491	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e4a8yC3	C:492-664	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e4a8yA4 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4a8yB4	A:X,Y,Z->B:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4a8yB4	A:x,y,z->B:-X+1,Y-1/2,-Z+1	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4a8yC4	A:X,Y,Z->C:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e4a8yC4	A:-X,Y-1/2,-Z->C:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol