Domain ID e4acaB12

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: GTP_EFTU_D2
UID: 001166930
Type: Automatic domain
Parent: e2c78A1
Range: B:177-271
Ligands: DXC SO4
PDB: 4aca
PDB Description: TRANSLATION ELONGATION FACTOR SELB
UniProt: Q8J307
Hsap BLAST neighbor: P57772
Species: Methanococcus maripaludis

Structure of domain e4acaB12

Domains in the same chain:

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e4acaB14 B:1-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acaB12 B:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acaB2 B:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acaB4 B:388-468 cradle loop barrel RIFT-related Alanine racemase-C

Domains in the same PDB:

e4acaA1 A:1-28,A:50-179 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acaA9 A:180-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acaA2 A:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acaA4 A:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acaB14 B:1-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acaB12 B:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acaB2 B:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acaB4 B:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acaC10 C:-2-173 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acaC8 C:174-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acaC2 C:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acaC4 C:388-468 cradle loop barrel RIFT-related Alanine racemase-C
e4acaD10 D:2-176 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4acaD8 D:177-271 cradle loop barrel RIFT-related Alanine racemase-C
e4acaD2 D:272-387 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e4acaD4 D:388-468 cradle loop barrel RIFT-related Alanine racemase-C

Structural contacts of domain e4acaB12 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4acaC10 B:X,X-Y-1,-Z->C:x,y,z P-loop domains-related Interaction Interface Pymol
e4acaC8 B:X,X-Y-1,-Z->C:x,y,z RIFT-related Interaction Interface Pymol
e4acaC10 B:X,Y,Z->C:x,y,z P-loop domains-related Interaction Interface Pymol
e4acaC8 B:X,Y,Z->C:x,y,z RIFT-related Interaction Interface Pymol
e4acaA4 B:x,y,z->A:-Y,X-Y,Z+1/3 RIFT-related Interaction Interface Pymol
e4acaB12 B:x,y,z->B:X,X-Y-1,-Z RIFT-related Interaction Interface Pymol
e4acaB12 B:X,X-Y-1,-Z->B:x,y,z RIFT-related Interaction Interface Pymol