Domain ID e4am3B2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001837104
Type: Automatic domain
Parent: e1e3hA5
Range: B:-1-144
PDB: 4am3
PDB Description: POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
UniProt: Q9AC32
Hsap BLAST neighbor: Q8TCS8
Species:

Structure of domain e4am3B2

Domains in the same chain:

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e4am3B2 B:-1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3B6 B:141-226 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3B4 B:227-326 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e4am3B3 B:325-460 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3B5 B:461-556 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3B7 B:554-565,B:585-619 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)

Domains in the same PDB:

e4am3A2 A:-1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3A6 A:141-226 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3A4 A:227-326 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e4am3A3 A:325-460 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3A5 A:461-556 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3A7 A:554-565,A:585-620 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4am3B2 B:-1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3B6 B:141-226 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3B4 B:227-326 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e4am3B3 B:325-460 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3B5 B:461-556 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3B7 B:554-565,B:585-619 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4am3C2 C:-1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3C6 C:141-226 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3C4 C:227-326 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e4am3C3 C:325-460 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4am3C5 C:461-556 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4am3C7 C:554-565,C:585-619 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)

Structural contacts of domain e4am3B2 of H-group "Ribosomal protein S5 domain 2-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4am3C2 B:X,Y,Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4am3C3 B:X,Y,Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4am3A2 B:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4am3B2 B:x,y,z->B:X,-Y+1,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4am3B2 B:X,-Y+1,-Z->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol