ECOD: domain e4b2qD5

Domain ID e4b2qD5

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: Alanine racemase-C
F: ATP-synt_ab_N

UID:	001213906
Type:	Automatic domain
Parent:	e2jdiA1
Range:	D:6-82
PDB:	4b2q
PDB Description:	ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL
UniProt:	P00830
Hsap BLAST neighbor:	P06576
Species:	Saccharomyces cerevisiae

Domains in the same chain:

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e4b2qD5	D:6-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qD4	D:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qD6	D:358-475	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e4b2qa1	a:26-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qa3	a:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qa2	a:382-510	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qA1	A:26-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qA3	A:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qA2	A:382-510	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qb2	b:25-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qb1	b:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qb3	b:382-509	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qB3	B:25-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qB1	B:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qB2	B:382-510	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qc1	c:26-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qc3	c:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qc2	c:382-510	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qC1	C:26-96	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qC3	C:97-381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qC2	C:382-510	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qd5	d:6-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qd4	d:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qd6	d:358-475	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qD5	D:6-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qD4	D:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qD6	D:358-475	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qe5	e:6-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qe4	e:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qe6	e:358-478	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qE1	E:6-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qE4	E:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qE5	E:358-478	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qf5	f:7-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qf4	f:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qf6	f:358-478	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qF5	F:7-82	cradle loop barrel	RIFT-related	Alanine racemase-C
e4b2qF4	F:83-357	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4b2qF6	F:358-478	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase
e4b2qg1	g:1-278	ATP synthase (F1-ATPase), gamma subunit	ATP synthase (F1-ATPase), gamma subunit	ATP synthase (F1-ATPase), gamma subunit
e4b2qG2	G:1-278	ATP synthase (F1-ATPase), gamma subunit	ATP synthase (F1-ATPase), gamma subunit	ATP synthase (F1-ATPase), gamma subunit
e4b2qh1	h:7-93	Epsilon subunit of F1F0-ATP synthase-N	Epsilon subunit of F1F0-ATP synthase-N	Epsilon subunit of F1F0-ATP synthase-N
e4b2qh2	h:95-138	Long alpha-hairpin	Epsilon subunit of F1F0-ATP synthase C-terminal domain	Epsilon subunit of F1F0-ATP synthase C-terminal domain
e4b2qH1	H:7-94	Epsilon subunit of F1F0-ATP synthase-N	Epsilon subunit of F1F0-ATP synthase-N	Epsilon subunit of F1F0-ATP synthase-N
e4b2qH2	H:95-138	Long alpha-hairpin	Epsilon subunit of F1F0-ATP synthase C-terminal domain	Epsilon subunit of F1F0-ATP synthase C-terminal domain
e4b2qi1	i:1-49	Epsilon subunit of mitochondrial F1F0-ATP synthase	Epsilon subunit of mitochondrial F1F0-ATP synthase	Epsilon subunit of mitochondrial F1F0-ATP synthase
e4b2qI1	I:1-59	Epsilon subunit of mitochondrial F1F0-ATP synthase	Epsilon subunit of mitochondrial F1F0-ATP synthase	Epsilon subunit of mitochondrial F1F0-ATP synthase
e4b2qj2	j:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qJ1	J:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qk2	k:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qK2	K:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2ql1	l:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qL1	L:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qm1	m:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qM2	M:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qn1	n:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qN1	N:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qo2	o:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qO2	O:1-76	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qp1	p:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qP1	P:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qq1	q:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qQ1	Q:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qr1	r:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qR1	R:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qs1	s:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qS1	S:1-74	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C	F1F0 ATP synthase subunit C
e4b2qt2	t:79-183	F-type ATP synthase subunit b	F-type ATP synthase subunit b	F-type ATP synthase subunit b
e4b2qT2	T:79-183	F-type ATP synthase subunit b	F-type ATP synthase subunit b	F-type ATP synthase subunit b
e4b2qu1	u:4-123	ATP synthase D chain-like	ATP synthase D chain-like	ATP synthase D chain-like
e4b2qU1	U:4-123	ATP synthase D chain-like	ATP synthase D chain-like	ATP synthase D chain-like
e4b2qv1	v:5-69	Mitochondrial ATP synthase coupling factor 6	Mitochondrial ATP synthase coupling factor 6	Mitochondrial ATP synthase coupling factor 6
e4b2qV1	V:5-70	Mitochondrial ATP synthase coupling factor 6	Mitochondrial ATP synthase coupling factor 6	Mitochondrial ATP synthase coupling factor 6
e4b2qw1	w:1-110	ATPD N-terminal domain-like	N-terminal domain of the delta subunit of the F1F0-ATP synthase	N-terminal domain of the delta subunit of the F1F0-ATP synthase
e4b2qW1	W:11-120	ATPD N-terminal domain-like	N-terminal domain of the delta subunit of the F1F0-ATP synthase	N-terminal domain of the delta subunit of the F1F0-ATP synthase

Structural contacts of domain e4b2qD5 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4b2qA1	D:X,Y,Z->A:x,y,z	RIFT-related	Interaction Interface Pymol
e4b2qC3	D:X,Y,Z->C:x,y,z	P-loop domains-related	Interaction Interface Pymol
e4b2qC1	D:X,Y,Z->C:x,y,z	RIFT-related	Interaction Interface Pymol
e4b2qW1	D:x,y,z->W:X,Y,Z	N-terminal domain of the delta subunit of the F1F0-ATP synthase	Interaction Interface Pymol