Domain ID e4b3qA9

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 001187036
Type: Automatic domain
Parent: e2zd1B3
Range: A:317-428
Ligands: NVP
PDB: 4b3q
PDB Description: REVERSE TRANSCRIPTASE/RIBONUCLEASE H
UniProt: P04585
Species: Human immunodeficiency virus 1

Structure of domain e4b3qA9

Domains in the same chain:

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e4b3qA12 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4b3qA11 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4b3qA9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4b3qA10 A:429-556 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4b3qA12 A:1-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4b3qA11 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4b3qA9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4b3qA10 A:429-556 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b3qB6 B:7-230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4b3qB1 B:231-304 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4b3qB2 B:305-431 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4b3qA9 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b3qB6 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4b3qB2 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4b3qA11 A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4b3qA11 A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol