Domain ID e4b4xD4

Download files:
  • A: a/b three-layered sandwiches
  • X: DTD-like
  • H: Inserted a+b domain in Dac-like proteins
  • T: Inserted a+b domain in Dac-like proteins
  • F: Peptidase_S13
UID: 001096391
Type: Automatic domain
Parent: e1w79A4
Range: D:67-163,D:239-284
Ligands: HQZ MG SO4
PDB: 4b4x
PDB Description: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
UniProt: P39045
Species: Actinomadura sp. R39

Structure of domain e4b4xD4

Domains in the same chain:

e4b4xD3 D:1-44,D:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e4b4xD2 D:45-66,D:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4b4xD4 D:67-163,D:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e4b4xD1 D:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins

Domains in the same PDB:

e4b4xA3 A:1-44,A:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e4b4xA2 A:45-66,A:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4b4xA4 A:67-163,A:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e4b4xA1 A:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e4b4xB3 B:1-44,B:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e4b4xB2 B:45-66,B:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4b4xB4 B:67-163,B:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e4b4xB1 B:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e4b4xC3 C:1-44,C:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e4b4xC2 C:45-66,C:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4b4xC4 C:67-163,C:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e4b4xC1 C:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins
e4b4xD3 D:1-44,D:354-466 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e4b4xD2 D:45-66,D:285-353 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4b4xD4 D:67-163,D:239-284 DTD-like Inserted a+b domain in Dac-like proteins Inserted a+b domain in Dac-like proteins
e4b4xD1 D:164-238 Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins Inserted beta sandwich domain in Dac-like proteins

Structural contacts of domain e4b4xD4 of H-group "Inserted a+b domain in Dac-like proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b4xC1 D:-X+1,Y-1/2,-Z->C:x,y,z Inserted beta sandwich domain in Dac-like proteins Interaction Interface Pymol
e4b4xD3 D:-X+1,Y-1/2,-Z->D:x,y,z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e4b4xC2 D:-X,Y-1/2,-Z->C:x,y,z alpha-helical domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e4b4xC3 D:x,y,z->C:X,Y,Z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol