Domain ID e4bgdA8

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DEAD
UID: 001390684
Type: Automatic domain
Parent: e4f91B4
Range: A:442-700
Ligands: PE5
PDB: 4bgd
PDB Description: PRE-MRNA-SPLICING HELICASE BRR2
UniProt: P32639
Hsap BLAST neighbor: O75643
Species: Saccharomyces cerevisiae

Structure of domain e4bgdA8

Domains in the same chain:

Download Pymol

e4bgdA8 A:442-700 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA9 A:701-905 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA3 A:906-1010 HTH HTH winged
e4bgdA12 A:1011-1142 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e4bgdA10 A:1143-1198 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e4bgdA7 A:1199-1333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4bgdA2 A:1334-1541 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA4 A:1542-1740 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA6 A:1741-1858 HTH HTH winged
e4bgdA11 A:1859-1991 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e4bgdA5 A:1992-2049 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e4bgdA1 A:2050-2163 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4bgdA8 A:442-700 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA9 A:701-905 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA3 A:906-1010 HTH HTH winged
e4bgdA12 A:1011-1142 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e4bgdA10 A:1143-1198 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e4bgdA7 A:1199-1333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4bgdA2 A:1334-1541 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA4 A:1542-1740 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4bgdA6 A:1741-1858 HTH HTH winged
e4bgdA11 A:1859-1991 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e4bgdA5 A:1992-2049 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e4bgdA1 A:2050-2163 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4bgdC1 C:2148-2395 Cytidine deaminase-like Cytidine deaminase-like Cytidine deaminase-like

Structural contacts of domain e4bgdA8 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4bgdA6 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z HTH Interaction Interface Pymol