ECOD: domain e4bksD1

Domain ID e4bksD1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Ubiquitin-like
F: ubiquitin

UID:	001122304
Type:	Automatic domain
Parent:	e2zeqA1
Range:	D:1-102
PDB:	4bks
PDB Description:	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
UniProt:	Q15370
Hsap BLAST neighbor:	Q15370
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e4bksD1

Domains in the same chain:

Download Pymol

e4bksD1	D:1-102	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Domains in the same PDB:

e4bksA1	A:1-103	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4bksB1	B:17-112	POZ domain	POZ domain	POZ domain
e4bksC4	C:62-154	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e4bksC3	C:155-202	SOCS box-like	SOCS box-like	SOCS box-like
e4bksD1	D:1-102	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4bksE1	E:17-112	POZ domain	POZ domain	POZ domain
e4bksF4	F:63-154	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e4bksF3	F:155-204	SOCS box-like	SOCS box-like	SOCS box-like
e4bksG1	G:1-103	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4bksH1	H:17-112	POZ domain	POZ domain	POZ domain
e4bksI4	I:62-154	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e4bksI3	I:155-205	SOCS box-like	SOCS box-like	SOCS box-like
e4bksJ1	J:1-103	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e4bksK1	K:16-112	POZ domain	POZ domain	POZ domain
e4bksL4	L:62-154	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e4bksL3	L:155-205	SOCS box-like	SOCS box-like	SOCS box-like

Structural contacts of domain e4bksD1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4bksE1	D:X,Y,Z->E:x,y,z	POZ domain	Interaction Interface Pymol
e4bksJ1	D:-Y,-X+1,-Z+1/4->J:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e4bksF3	D:X,Y,Z->F:x,y,z	SOCS box-like	Interaction Interface Pymol