Domain ID e4c3oD2

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  • A: few secondary structure elements
  • X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • F: NiFe_hyd_SSU_C
UID: 001142187
Type: Automatic domain
Parent: e1ublS1
Range: D:183-266
Ligands: F3S SF4
PDB: 4c3o
PDB Description: HYDROGENASE-1 SMALL SUBUNIT
UniProt: Q8ZPG9
Species:

Structure of domain e4c3oD2

Domains in the same chain:

e4c3oD1 D:5-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4c3oD2 D:183-266 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e4c3oA4 A:3-57,A:544-585 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oA3 A:54-97,A:491-543 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oA2 A:96-335,A:408-490 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4c3oA1 A:336-408 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4c3oB1 B:4-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4c3oB2 B:183-266 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4c3oC4 C:3-57,C:544-585 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oC3 C:54-97,C:491-543 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oC2 C:96-335,C:408-490 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4c3oC1 C:336-408 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4c3oD1 D:5-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4c3oD2 D:183-266 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e4c3oE4 E:3-57,E:544-585 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oE3 E:54-97,E:491-543 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e4c3oE2 E:96-335,E:408-490 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e4c3oE1 E:336-408 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e4c3oF1 F:5-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e4c3oF2 F:183-267 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e4c3oD2 of H-group "Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4c3oC2 D:x,y,z->C:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e4c3oC3 D:x,y,z->C:X,Y,Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e4c3oA2 D:x,y,z->A:X,Y,Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e4c3oB2 D:x,y,z->B:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e4c3oF1 D:-X,Y,-Z+3->F:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol