Domain ID e4ckdM1

Download files:
  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 001140273
Type: Automatic domain
Parent: e1mjuL1
Range: M:1-107
PDB: 4ckd
PDB Description: SCFV13R4 ANTIBODY FV LIGHT CHAIN
UniProt: P01642
Hsap BLAST neighbor: A0A0A0MT36
Species: Mus musculus

Structure of domain e4ckdM1

Domains in the same chain:

e4ckdM1 M:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4ckdA8 A:3-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4ckdA9 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdA6 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e4ckdA10 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdA7 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e4ckdB1 B:3-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4ckdB3 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e4ckdB2 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e4ckdC1 C:3-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4ckdC3 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e4ckdC2 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e4ckdD1 D:3-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e4ckdD3 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e4ckdD2 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e4ckdH1 H:1-114 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdI1 I:1-114 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdJ1 J:1-114 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdK1 K:1-114 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdM1 M:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdN1 N:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4ckdO1 O:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4ckdM1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ckdI1 M:X,Y,Z->I:x,y,z Immunoglobulin-related Interaction Interface Pymol
e4ckdD5 M:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e4ckdD1 M:X,Y,Z->D:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e4ckdD2 M:X,Y,Z->D:x,y,z Immunoglobulin-related Interaction Interface Pymol