Domain ID e4cmqB2

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Cas9_RuvC
UID: 001144760
Type: Manual and representative domain
Range: B:4-57,B:718-766,B:925-1102
Ligands: MN
PDB: 4cmq
PDB Description: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
UniProt: Q99ZW2
Species:

Structure of domain e4cmqB2

Domains in the same chain:

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e4cmqB2 B:4-57,B:718-766,B:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmqB1 B:58-713 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmqB3 B:775-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmqB4 B:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmqB5 B:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain

Domains in the same PDB:

e4cmqA1 A:4-57,A:718-766,A:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmqA4 A:58-447,A:503-714 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmqA3 A:774-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmqA2 A:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmqA5 A:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain
e4cmqB2 B:4-57,B:718-766,B:925-1102 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4cmqB1 B:58-713 CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe CRISPR-associated endonuclease Cas9 alpha-helical lobe
e4cmqB3 B:775-924 His-Me finger endonucleases His-Me finger endonucleases His-Me finger endonucleases
e4cmqB4 B:1137-1200 SSHS domain SSHS domain in CRISPR-associated endonuclease Cas9 SSHS domain in CRISPR-associated endonuclease Cas9
e4cmqB5 B:1201-1363 CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain CRISPR-associated endonuclease Cas9 C-terminal domain

Structural contacts of domain e4cmqB2 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4cmqA4 B:X,Y,Z-1->A:x,y,z CRISPR-associated endonuclease Cas9 alpha-helical lobe Interaction Interface Pymol
e4cmqA2 B:x,y,z->A:-X-1/2,Y-1/2,-Z+1 SSHS domain in CRISPR-associated endonuclease Cas9 Interaction Interface Pymol
e4cmqA4 B:x,y,z->A:-X-1/2,Y-1/2,-Z+1 CRISPR-associated endonuclease Cas9 alpha-helical lobe Interaction Interface Pymol
e4cmqA5 B:x,y,z->A:-X-1/2,Y-1/2,-Z+1 CRISPR-associated endonuclease Cas9 C-terminal domain Interaction Interface Pymol
e4cmqA4 B:-X,-Y-1,Z-1->A:x,y,z CRISPR-associated endonuclease Cas9 alpha-helical lobe Interaction Interface Pymol