ECOD: domain e4cpkB5

Domain ID e4cpkB5

A: beta complex topology
X: Penicillin binding protein dimerisation domain
H: Penicillin binding protein dimerisation domain
T: Penicillin binding protein dimerisation domain
F: PBP_dimer

UID:	001348692
Type:	Automatic domain
Parent:	e1rp5A6
Range:	B:139-167,B:239-326
Ligands:	CD CL MUR
PDB:	4cpk
PDB Description:	Penicillin binding protein 2 prime
UniProt:	Q54113
Species:

Domains in the same chain:

Download Pymol

e4cpkB3	B:27-138	Cystatin-like	NTF2-like	NTF2-like
e4cpkB5	B:139-167,B:239-326	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e4cpkB4	B:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e4cpkB1	B:327-398,B:525-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e4cpkB2	B:399-524	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Domains in the same PDB:

e4cpkA3	A:27-138	Cystatin-like	NTF2-like	NTF2-like
e4cpkA5	A:139-167,A:239-326	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e4cpkA4	A:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e4cpkA1	A:327-398,A:525-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e4cpkA2	A:399-524	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e4cpkB3	B:27-138	Cystatin-like	NTF2-like	NTF2-like
e4cpkB5	B:139-167,B:239-326	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain	Penicillin binding protein dimerisation domain
e4cpkB4	B:168-238	ClpS-like	Penicillin binding protein ClpS-like domain	Penicillin binding protein ClpS-like domain
e4cpkB1	B:327-398,B:525-668	Profilin-like	a+b domain in beta-lactamase/transpeptidase-like proteins	a+b domain in beta-lactamase/transpeptidase-like proteins
e4cpkB2	B:399-524	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Structural contacts of domain e4cpkB5 of H-group "Penicillin binding protein dimerisation domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4cpkA1	B:x,y,z->A:X,Y,Z	a+b domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol
e4cpkA4	B:x,y,z->A:X,Y,Z	Penicillin binding protein ClpS-like domain	Interaction Interface Pymol
e4cpkA3	B:x,y,z->A:X,Y,Z	NTF2-like	Interaction Interface Pymol
e4cpkA5	B:x,y,z->A:X,Y,Z	Penicillin binding protein dimerisation domain	Interaction Interface Pymol
e4cpkA2	B:-X,Y-1/2,-Z+1/2->A:x,y,z	alpha-helical domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol
e4cpkA1	B:-X,Y-1/2,-Z+1/2->A:x,y,z	a+b domain in beta-lactamase/transpeptidase-like proteins	Interaction Interface Pymol