Domain ID e4d9rE1

Download files:
  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 000987300
Type: Automatic domain
Parent: e1mjuH1
Range: E:1-121
Ligands: CL
PDB: 4d9r
PDB Description: Fab heavy chain
Hsap BLAST neighbor: A0A0J9YVY3
Species: Homo sapiens

Structure of domain e4d9rE1

Domains in the same chain:

e4d9rE1 E:1-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rE2 E:122-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e4d9rA1 A:16-243 cradle loop barrel RIFT-related FMN-binding split barrel 2
e4d9rB1 B:16-243 cradle loop barrel RIFT-related FMN-binding split barrel 2
e4d9rD1 D:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rD2 D:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rE1 E:1-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rE2 E:122-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rH1 H:1-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rH2 H:122-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4d9rL2 L:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e4d9rE1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4d9rD1 E:x,y,z->D:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e4d9rB1 E:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol
e4d9rA1 E:x,y,z->A:-X-1/2,Y-1/2,-Z-1/4 RIFT-related Interaction Interface Pymol
e4d9rB1 E:-Y-1/2,X+1/2,Z-1/4->B:x,y,z RIFT-related Interaction Interface Pymol