Domain ID e4ddgE1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ubiquitin
UID: 000962050
Type: Automatic domain
Parent: e1ogwA1
Range: E:1-74
PDB: 4ddg
PDB Description: Polyubiquitin-C
UniProt: P0CG48
Hsap BLAST neighbor: P62979
Species: Homo sapiens

Structure of domain e4ddgE1

Domains in the same chain:

e4ddgE1 E:1-74 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e4ddgA2 A:-1-1046 UBC-like UBC-like UBC-like
e4ddgA1 A:1047-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgB2 B:-1-1029 UBC-like UBC-like UBC-like
e4ddgB1 B:1030-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgC1 C:-1-145 UBC-like UBC-like UBC-like
e4ddgC2 C:1026-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgD1 D:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgE1 E:1-74 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgF1 F:1-74 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgG1 G:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgH1 H:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgI1 I:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgJ1 J:-1-1025 UBC-like UBC-like UBC-like
e4ddgJ2 J:1026-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgK1 K:-1-1025 UBC-like UBC-like UBC-like
e4ddgK2 K:1026-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgL3 L:-1-1046 UBC-like UBC-like UBC-like
e4ddgL4 L:1047-1271 Cysteine proteinases-like Cysteine proteinases Cysteine proteinases
e4ddgM1 M:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgN1 N:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgO1 O:1-74 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgP1 P:1-74 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgQ1 Q:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like
e4ddgR1 R:1-76 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e4ddgE1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ddgB1 E:x,y,z->B:X,Y,Z Cysteine proteinases Interaction Interface Pymol
e4ddgL4 E:x,y,z->L:X-1,Y,Z Cysteine proteinases Interaction Interface Pymol
e4ddgH1 E:X,Y,Z->H:x,y,z Ubiquitin-related Interaction Interface Pymol
e4ddgJ2 E:x,y,z->J:-X-1,Y-1/2,-Z-1 Cysteine proteinases Interaction Interface Pymol
e4ddgJ2 E:x,y,z->J:X,Y,Z Cysteine proteinases Interaction Interface Pymol