Domain ID e4dfpA7

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: DNA_pol_A
UID: 001168727
Type: Automatic domain
Parent: e2hhvA1
Range: A:626-749
Ligands: 0L7 EDO
PDB: 4dfp
PDB Description: DNA POLYMERASE I, THERMOSTABLE
UniProt: P19821
Hsap BLAST neighbor: O75417
Species: Thermus aquaticus

Structure of domain e4dfpA7

Structural contacts of domain e4dfpA7 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dfpA6 A:x,y,z->A:-X,-X+Y,-Z+1/3 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfpA7 A:x,y,z->A:-X,-X+Y,-Z+1/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfpA7 A:-X,-X+Y,-Z+1/3->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfpA6 A:-X,-X+Y,-Z+1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dfpA7 A:x,y,z->A:X-Y,-Y,-Z-1/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfpA7 A:X-Y,-Y,-Z-1/3->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dfpA8 A:x,y,z->A:-X,-X+Y,-Z-2/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfpA8 A:-X,-X+Y,-Z-2/3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dfpA5 A:x,y,z->A:X-Y-1,-Y-1,-Z-1/3 Ribonuclease H-like Interaction Interface Pymol
e4dfpA6 A:-Y,X-Y,Z+1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol