ECOD: domain e4dkrA2

Domain ID e4dkrA2

A: a+b two layers
X: gp120 inner domain
H: gp120 inner domain
T: gp120 inner domain
F: GP120

UID:	001829455
Type:	Automatic domain
Parent:	e4rfnG2
Range:	A:44-255,A:474-492
Ligands:	0LJ EPE NAG
PDB:	4dkr
PDB Description:	HIV-1 gp120 core
UniProt:	Q0ED31
Species:

Domains in the same chain:

Download Pymol

e4dkrA2	A:44-255,A:474-492	gp120 inner domain	gp120 inner domain	gp120 inner domain
e4dkrA1	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e4dkrA2	A:44-255,A:474-492	gp120 inner domain	gp120 inner domain	gp120 inner domain
e4dkrA1	A:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e4dkrC1	C:44-255,C:474-492	gp120 inner domain	gp120 inner domain	gp120 inner domain
e4dkrC2	C:256-473	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain

Structural contacts of domain e4dkrA2 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4dkrA2	A:x,y,z->A:-X+1,Y-1/2,-Z+1	gp120 inner domain	Interaction Interface Pymol
e4dkrA2	A:-X+1,Y-1/2,-Z+1->A:x,y,z	gp120 inner domain	Interaction Interface Pymol
e4dkrA1	A:-X+1,Y-1/2,-Z+1->A:x,y,z	Ribosomal protein L31e/gp120 outer domain	Interaction Interface Pymol
e4dkrA1	A:-X,Y-1/2,-Z+1->A:x,y,z	Ribosomal protein L31e/gp120 outer domain	Interaction Interface Pymol