ECOD: domain e4do4A1

Domain ID e4do4A1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: Melibiase_2

UID:	000153039
Type:	Automatic domain
Parent:	e1uasA2
Range:	A:18-309
Ligands:	ACY CIT DJN GOL NAG
DrugDomain:	DB09462
PDB:	4do4
PDB Description:	Alpha-N-acetylgalactosaminidase
UniProt:	P17050
Hsap BLAST neighbor:	P17050
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4do4A1	A:18-309	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4do4A2	A:310-404	Glycosyl hydrolase domain-like	Glycosyl hydrolase domain	Glycosyl hydrolase domain

Domains in the same PDB:

e4do4A1	A:18-309	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4do4A2	A:310-404	Glycosyl hydrolase domain-like	Glycosyl hydrolase domain	Glycosyl hydrolase domain
e4do4B2	B:18-309	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e4do4B1	B:310-404	Glycosyl hydrolase domain-like	Glycosyl hydrolase domain	Glycosyl hydrolase domain

Structural contacts of domain e4do4A1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4do4B2	A:X,Y,Z->B:x,y,z	TIM barrels	Interaction Interface Pymol
e4do4B1	A:X,Y,Z->B:x,y,z	Glycosyl hydrolase domain	Interaction Interface Pymol
e4do4A1	A:x,y,z->A:-X+1,Y,-Z	TIM barrels	Interaction Interface Pymol
e4do4A1	A:-X+1,Y,-Z->A:x,y,z	TIM barrels	Interaction Interface Pymol
e4do4B2	A:-X+1/2,Y-1/2,-Z+1->B:x,y,z	TIM barrels	Interaction Interface Pymol