Domain ID e4dpmB2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NAD(P)-binding Rossmann-fold domains
  • F: Semialdhyde_dh
UID: 000974406
Type: Automatic domain
Parent: e1t4bA2
Range: B:1-136,B:315-354
Ligands: COA
PDB: 4dpm
PDB Description: MALONYL-COA/SUCCINYL-COA REDUCTASE
UniProt: Q96YK1
Species:

Structure of domain e4dpmB2

Domains in the same chain:

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e4dpmB2 B:1-136,B:315-354 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmB1 B:137-314 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Domains in the same PDB:

e4dpmA2 A:1-136,A:315-354 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmA1 A:137-314 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e4dpmB2 B:1-136,B:315-354 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmB1 B:137-314 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e4dpmC2 C:1-136,C:315-354 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmC1 C:137-314 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e4dpmD2 D:1-136,D:315-354 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmD1 D:137-314 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e4dpmE1 E:7-135,E:314-359 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmE2 E:136-313 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e4dpmF2 F:1-135,F:314-353 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e4dpmF1 F:136-313 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Structural contacts of domain e4dpmB2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dpmB1 B:x,y,z->B:X,-Y,-Z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e4dpmB2 B:x,y,z->B:X,-Y,-Z Rossmann-related Interaction Interface Pymol
e4dpmB2 B:X,-Y,-Z->B:x,y,z Rossmann-related Interaction Interface Pymol
e4dpmB1 B:X,-Y,-Z->B:x,y,z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e4dpmA1 B:x,y,z->A:X,Y,Z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e4dpmA2 B:x,y,z->A:X,-Y,-Z Rossmann-related Interaction Interface Pymol
e4dpmA1 B:x,y,z->A:X,-Y,-Z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e4dpmA2 B:x,y,z->A:X-1/2,Y+1/2,Z Rossmann-related Interaction Interface Pymol
e4dpmD2 B:x,y,z->D:X-1,Y,Z Rossmann-related Interaction Interface Pymol
e4dpmC1 B:X,Y,Z->C:x,y,z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e4dpmC2 B:X,Y,Z->C:x,y,z Rossmann-related Interaction Interface Pymol
e4dpmD2 B:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol