Domain ID e4dptA5

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: MVD-like_N
UID: 001202430
Type: Automatic domain
Parent: e1fi4A2
Range: A:1-168
Ligands: GOL
PDB: 4dpt
PDB Description: MEVALONATE DIPHOSPHATE DECARBOXYLASE
UniProt: Q9FD73
Hsap BLAST neighbor: P53602
Species: Staphylococcus epidermidis

Structure of domain e4dptA5

Structural contacts of domain e4dptA5 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dptA6 A:x,y,z->A:-X,Y,-Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dptA5 A:x,y,z->A:-X,Y,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dptA6 A:-X,Y,-Z->A:x,y,z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dptA5 A:-X,Y,-Z->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dptB5 A:X,Y,Z->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dptB6 A:X,Y,Z->B:x,y,z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dptB6 A:x,y,z->B:X-1/2,Y-1/2,Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dptB5 A:x,y,z->B:X-1/2,Y-1/2,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dptA6 A:x,y,z->A:X-1/2,Y+1/2,Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dptB5 A:x,y,z->B:-X+1/2,Y-1/2,-Z+1 Ribosomal protein S5 domain 2-like Interaction Interface Pymol