Domain ID e4dpwB6

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: GHMP Kinase, C-terminal domain
  • T: GHMP Kinase, C-terminal domain
  • F: MDD_C
UID: 001202457
Type: Automatic domain
Parent: e1fi4A1
Range: B:169-326
Ligands: AGS DP6
PDB: 4dpw
PDB Description: MEVALONATE DIPHOSPHATE DECARBOXYLASE
UniProt: Q9FD73
Species: Staphylococcus epidermidis

Structure of domain e4dpwB6

Domains in the same chain:

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e4dpwB5 B:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwB6 B:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain

Domains in the same PDB:

e4dpwA5 A:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwA6 A:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwB5 B:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwB6 B:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwC5 C:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwC6 C:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwD5 D:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwD6 D:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwE5 E:-1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwE6 E:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwF5 F:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwF6 F:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwG5 G:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwG6 G:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain
e4dpwH5 H:1-168 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4dpwH6 H:169-326 Alpha-beta plaits GHMP Kinase, C-terminal domain GHMP Kinase, C-terminal domain

Structural contacts of domain e4dpwB6 of H-group "GHMP Kinase, C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dpwG6 B:x,y,z->G:X-1/2,-Y-1/2,-Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpwF5 B:x,y,z->F:X-1/2,-Y+1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpwH5 B:X,Y,Z->H:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpwH6 B:X,Y,Z->H:x,y,z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpwH6 B:x,y,z->H:X-1/2,-Y+1/2,-Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpwH5 B:x,y,z->H:X-1/2,-Y+1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol