Domain ID e4dpyB5

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: MVD-like_N
UID: 001202508
Type: Automatic domain
Parent: e1fi4A2
Range: B:2-168
Ligands: 2P0
PDB: 4dpy
PDB Description: MEVALONATE DIPHOSPHATE DECARBOXYLASE
UniProt: Q9FD73
Hsap BLAST neighbor: P53602
Species: Staphylococcus epidermidis

Structure of domain e4dpyB5

Structural contacts of domain e4dpyB5 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dpyA6 B:x,y,z->A:X,Y,Z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpyA5 B:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpyA5 B:x,y,z->A:-X-1,Y,-Z-1/2 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpyA6 B:x,y,z->A:-X-1,Y,-Z-1/2 GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpyA5 B:-X-1/2,Y-1/2,-Z-1/2->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpyA6 B:-X-1/2,Y-1/2,-Z-1/2->A:x,y,z GHMP Kinase, C-terminal domain Interaction Interface Pymol
e4dpyA5 B:x,y,z->A:-X-1/2,-Y-1/2,Z-1/2 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpyB5 B:x,y,z->B:-X-1,Y,-Z-1/2 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4dpyB5 B:-X-1,Y,-Z-1/2->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol