Domain ID e4dqpD12

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 001236917
Type: Automatic domain
Parent: e2hhvA2
Range: D:469-643
Ligands: DCT
PDB: 4dqp
PDB Description: DNA POLYMERASE
UniProt: Q5KWC1
Hsap BLAST neighbor: Q7Z5Q5
Species:

Structure of domain e4dqpD12

Domains in the same chain:

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e4dqpD10 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqpD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqpD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqpD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4dqpA10 A:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqpA12 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqpA9 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqpA11 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4dqpD10 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dqpD12 D:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dqpD9 D:644-668,D:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dqpD11 D:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4dqpD12 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dqpA11 D:x,y,z->A:-X+5/2,-Y,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dqpA12 D:x,y,z->A:-X+5/2,-Y,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dqpA10 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e4dqpA12 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dqpA11 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dqpA10 D:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e4dqpA10 D:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4dqpA9 D:x,y,z->A:X-1/2,-Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4dqpD10 D:-X+3,Y-1/2,-Z-1/2->D:x,y,z Ribonuclease H-like Interaction Interface Pymol