Domain ID e4ds5D4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_polI_exo1
UID: 001832988
Type: Automatic domain
Parent: e2hhvA4
Range: D:296-468
Ligands: SO4
PDB: 4ds5
PDB Description: DNA POLYMERASE
UniProt: Q5KWC1
Species:

Structure of domain e4ds5D4

Domains in the same chain:

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e4ds5D4 D:296-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ds5D2 D:465-649 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ds5D3 D:650-685,D:706-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4ds5D5 D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Domains in the same PDB:

e4ds5A10 A:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ds5A12 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ds5A9 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ds5A11 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4ds5D4 D:296-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ds5D2 D:465-649 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4ds5D3 D:650-685,D:706-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4ds5D5 D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Structural contacts of domain e4ds5D4 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ds5D5 D:X-1/2,-Y-1/2,-Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ds5D3 D:X-1/2,-Y-1/2,-Z->D:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4ds5A12 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ds5A12 D:x,y,z->A:X,Y,Z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ds5A10 D:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e4ds5A11 D:X-1/2,-Y-1/2,-Z->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4ds5A12 D:X-1/2,-Y-1/2,-Z->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4ds5D2 D:x,y,z->D:-X+3,Y-1/2,-Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol