Domain ID e4dsjB12

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 001236877
Type: Automatic domain
Parent: e2hhvA2
Range: B:469-643
PDB: 4dsj
PDB Description: DNA POLYMERASE
UniProt: E1C9K5
Hsap BLAST neighbor: Q7Z5Q5
Species: Geobacillus stearothermophilus

Structure of domain e4dsjB12

Domains in the same chain:

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e4dsjB10 B:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dsjB12 B:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dsjB9 B:644-668,B:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dsjB11 B:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4dsjA10 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dsjA12 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dsjA9 A:644-668,A:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dsjA11 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4dsjB10 B:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4dsjB12 B:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4dsjB9 B:644-668,B:793-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4dsjB11 B:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4dsjB12 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4dsjB12 B:x,y,z->B:X-1/2,-Y+1/2,-Z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dsjB12 B:X-1/2,-Y+1/2,-Z->B:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4dsjB11 B:X-1/2,-Y+1/2,-Z->B:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4dsjA10 B:X-1,Y,Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol