Domain ID e4e0sB8

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  • A: few secondary structure elements
  • X: TSP-1 type 1 repeat
  • H: TSP-1 type 1 repeat
  • T: TSP-1 type 1 repeat
  • F: TSP_1
UID: 001386123
Type: Automatic domain
Parent: e1w0rA2
Range: B:1-58
Ligands: MAN
PDB: 4e0s
PDB Description: Complement component C6
UniProt: P13671
Hsap BLAST neighbor: P13671
Species: Homo sapiens

Structure of domain e4e0sB8

Domains in the same chain:

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e4e0sB8 B:1-58 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB5 B:59-115 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB11 B:116-157 EGF-like LDL receptor-like module LDL receptor-like module
e4e0sB3 B:158-498 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e4e0sB2 B:499-536 EGF-like EGF-related EGF/Laminin
e4e0sB9 B:537-610 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB4 B:611-680 EGF-like EGF-related Complement control module/SCR domain
e4e0sB6 B:681-745 EGF-like EGF-related Complement control module/SCR domain
e4e0sB7 B:765-832 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e4e0sB10 B:833-860 EGF-like EGF-related EGF/Laminin
e4e0sB12 B:861-913 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Domains in the same PDB:

e4e0sA10 A:20-122 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA9 A:122-223 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA5 A:222-349 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA8 A:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA7 A:458-567 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA1 A:566-676,A:766-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA6 A:821-934 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e4e0sA11 A:932-983,A:1308-1370 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e4e0sA2 A:983-1307 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e4e0sA3 A:1370-1532 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e4e0sA4 A:1530-1676 OB-fold TIMP-like TIMP-like
e4e0sB8 B:1-58 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB5 B:59-115 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB11 B:116-157 EGF-like LDL receptor-like module LDL receptor-like module
e4e0sB3 B:158-498 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e4e0sB2 B:499-536 EGF-like EGF-related EGF/Laminin
e4e0sB9 B:537-610 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e4e0sB4 B:611-680 EGF-like EGF-related Complement control module/SCR domain
e4e0sB6 B:681-745 EGF-like EGF-related Complement control module/SCR domain
e4e0sB7 B:765-832 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e4e0sB10 B:833-860 EGF-like EGF-related EGF/Laminin
e4e0sB12 B:861-913 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Structural contacts of domain e4e0sB8 of H-group "TSP-1 type 1 repeat":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4e0sB8 B:x,y,z->B:-X+1,-Y+1/2,Z TSP-1 type 1 repeat Interaction Interface Pymol
e4e0sB8 B:-X+1,-Y+1/2,Z->B:x,y,z TSP-1 type 1 repeat Interaction Interface Pymol