Domain ID e4f3oD1

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: DNA_pol_A
UID: 001086964
Type: Automatic domain
Parent: e2hhvA1
Range: D:668-791
Ligands: D3T
PDB: 4f3o
PDB Description: DNA POLYMERASE
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species:

Structure of domain e4f3oD1

Domains in the same chain:

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e4f3oD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f3oD2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f3oD3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f3oD1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e4f3oA2 A:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f3oA10 A:469-643 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f3oA8 A:644-668,A:793-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f3oA9 A:669-792 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4f3oD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f3oD2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f3oD3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f3oD1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e4f3oD1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4f3oD4 D:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4f3oD3 D:X-1/2,-Y-1/2,-Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4f3oA10 D:x,y,z->A:-X+5/2,-Y,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4f3oA9 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4f3oA2 D:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol