Domain ID e4f8rD1

Download files:
  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: DNA_pol_A
UID: 001088104
Type: Automatic domain
Parent: e2hhvA1
Range: D:650-679,D:710-791
PDB: 4f8r
PDB Description: DNA POLYMERASE
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species:

Structure of domain e4f8rD1

Domains in the same chain:

Download Pymol

e4f8rD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f8rD3 D:465-649 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f8rD1 D:650-679,D:710-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4f8rD5 D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Domains in the same PDB:

e4f8rA4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f8rA2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f8rA3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4f8rA1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4f8rD4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4f8rD3 D:465-649 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4f8rD1 D:650-679,D:710-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e4f8rD5 D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like

Structural contacts of domain e4f8rD1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4f8rD4 D:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e4f8rD4 D:X-1/2,-Y-1/2,-Z->D:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4f8rA2 D:x,y,z->A:-X+5/2,-Y,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4f8rA1 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e4f8rA4 D:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol